Simulate Design

GenoCAD now supports the ability to simulate designs using the COPASI simulation engine. In order to be simulated, however, the design must be associated with an attribute grammar. Some public designs are provided for demonstration purposes.

Public Designs


pLacl tetR04/29/2012 07:32:17 PMValid design
Sample Switch04/30/2012 02:20:14 PMValid design
Oscillator04/30/2012 02:21:01 PMValid design
Switch LacI/TetRplaci tetr ptetr laci References: Gardner, T. S., Cantor, C. R., & Collins, J. J. (2000). Construction of a genetic toggle switch in Escherichia coli. Nature, 403(6767), 339–42. doi:10.1038/35002131 10/03/2012 11:21:29 AMValid design
Repressilatorplaci tetr pci laci ptetr ci References: Elowitz, M. B., & Leibler, S. (2000). A synthetic oscillatory network of transcriptional regulators. Nature, 403(6767), 335–8. doi:10.1038/35002125 10/03/2012 11:22:58 AMValid design
Switch LacI/cIplaci ci pci laci References: Gardner, T. S., Cantor, C. R., & Collins, J. J. (2000). Construction of a genetic toggle switch in Escherichia coli. Nature, 403(6767), 339–42. doi:10.1038/35002131 10/03/2012 11:24:03 AMValid design
Status Key: Sequence mismatch
Out of date		 Under development
Unfinished		 Invalid design
Invalid		 Needs validation
Needs validation		 Valid design
Valid